Hello! I am AMIT HASAN. You are welcome to my ‘research’ page. Here, you can find my current projects, previous research experiences, published peer-reviewed articles, and what skill-sets I possessed in research, overall in academia.
My ResearchGate and ORCID
Peer-Reviewed Publications
1. Hasan MA, Hakim FT, Shovon MT, Islam MM, Islam MS, Islam MA. The investigation of nonsynonymous SNPs of human SLC6A4 gene associated with depression: An in silico approach. Heliyon. 2021 Aug 1;7(8):e07815. (Read the article)
2. Ali MR*, Hasan MA*, Rahman MS*, Billah M, Karmakar S, Shimu AS, Hossain AS, Maruf MM, Rahman MS, Saju MS, Hasan MR. Clinical manifestations and Scoio-demographic status of COVID-19 patients during the second-wave of pandemic: A Bangladesh experience. Journal of Infection and Public Health. 2021 Jun 25. [* indicated Co-first Author] (Read the Article)
3. Islam, M. S., Sultana, R., Hasan, M. A., Alam, M. S., Sikdar, B., Kamaruzzaman, M., & Islam, M.A. (2020). Characterization and biocontrol measures of Pseudomonas syringae pv. syringae associated with citrus blast disease. Vegetos, 33(3), 555-569. DOI: 10.1007/s42535-020- 00138-1 (Read the Article)
4. Md. Kamaruzzaman, Md. Samiul Islam, Shafi Mahmud, Shakil Ahmed Polash, Razia Sultana, Md. Amit Hasan, Chao Wang, Chunhao Jiang. In vitro and in silico approach of fungal growth inhibition by Trichoderma asperellum HbGT6-07 dereived volatile organic compounds. Arabian Journal of Chemistry, 2021. 103290. ISSN 1878-5352. https://doi.org/10.1016/j.arabjc.2021.103290. (Read the Article)
Academic Conferences
1. Hasan M.A., Sultana R, Alam J., Islam M.A. Pathogen Derived Transgenic Plant and Their Resistant Mechanism: A Review. Poster presented at: National DNA and Genomic Research Conference 2019, 2019 May 02-03. (Read the abstract)
2. Islam M.S., Sultana R, Hasan M.A., Alam M.S., Islam M.A., Sikdar B. Molecular Detection of Fungal and Bacterial Pathogen Causing Diseases in Citrus sp. and Their Control Mechanism. Poster presented at: National DNA and Genomic Research Conference 2019, 2019 May 02-03. (Read the Abstract)
3. Jabin T, Haque A, Hasan M.A., Islam S. Isolation, Characterization and Antibiogram Study of Pathogenic Bacterial Species from Raw and Pasteurized Cow Milk. Poster presented at: National DNA and Genomic Research Conference 2019, 2019 May 02-03. (Read the Abstract)
Experiences in Academia
Experience 6: Supervised Project (October 2022 - December 2022)
Learning
- Intact larvae and fillet larvae preparation
- Calcium imaging
- Two-photon microscopy
- Image analysis (ImageJ)
- MATLAB
Experience 5: Master 1 Internship (April 2022 - July 2022)
Learning
- Brain dissection of Drosophila larvae
- Immuno-staining with antibodies
- Confocal microscopy
- Image analysis
- CATMAID web software
Experience 4: Lab Rotation (Dec 15 2021 - Jan 15 2022)
Project 1: Effect of Cytochalasin on the cytoskeleton of mouse fibroblast cell line
(Supervised by Dr. Francois Agnes, NeuroPSI, CNRS, University of Paris Saclay)
Project 2: A). Role of Parkin in Mitochondrial Apoptosis Induced by Debcl in Drosophila. || B). Immune Infection Challenge by ecc15 and ecc15-GFP Bacterial Strain with esg-GFP and dipt-GFP reporter system ||
(Supervised by: Dr. Vincent Rincheval, LGBC, UVSQ, University of Paris Saclay)
Learning
- Advanced level of Image processing with ImageJ
- Drosophila Biology: Male-Female identification and handling Wing dissection, Gut dissection, Fly homogenization
- Microscopy: Fluorescent and Confocal Microscopy
- Molecular Biology: Immunostaining
Experience 3: Independent Project (Mar 2020 - May 2021)
Project Title: The investigation of nonsynonymous SNPs of human SLC6A4 gene associated with depression: an in silico approach
Responsibilities
- Idea conceptualization, Literature review, Data collection
- Data curation and lead the research team
- Write entire original draft and participate in total editing process
- Learning: In silico techniques in the investigation of deleterious nsSNPs
- Research Update: Published
Experience 2: Research Intern (Jan 2019 - Jun 2019)
Professor O I Joarder DNA and Chromosome Research Lab, University of Rajshahi, Bangladesh
Project Title: Characterization and biocontrol measurement of blast disease
Responsibilities
- Genomic DNA extraction, PCR
- In vitro Antimicrobial assay and microscopic data collection
- DNA sequence analysis and phylogeny construction
- Literature review, paper writing (discussion part)
- Research Update: Published
Experience 1: Undergraduate Research Assistance
(Aug 2018 - Dec 2018)
Biometrical Genetics Laboratory, University of Rajshahi, Bangladesh
Project Title: Combining ability analysis of superior crossbreed mulberry silkworm
Responsibilities
- Data Collection: Collection of primary data (quantitative traits) of mulberry silkworm from BSRTI, Rajshahi, Bangladesh
- Research Design: Literature review, experimental design
- Combining ability analysis: To understand the nature of gene action involve in the inheritance and select best parental line
- Statistical analysis: Correlation, Regression, T test and ANOVA
Research Training
Basic Training on Biotechnology
National Institute of Biotechnology, Savar, Dhaka, Bangladesh || Dec (7-12) 2019
Learning
- DNA Extraction, Gel Electrophoresis
- Restriction Digestion, DNA Quantification, PCR
- Plant and Animal Cell Culture
- HPLC, DNA sequencing
- Basic Bioinformatics
CRISPR System Design
BIO Bangla, Dhaka, Bangladesh || Nov (1-2) 2019
Learning
- Theory Regarding CRISPR system
- In silico g-RNA design
- Hands on DH5-alpha cell engineering
- Schematic abstract presentation
Training on Research Methodology, Advanced Excel and SPSS
Department of Statistics, Rajshahi University, Bangladesh || Aug 2018- Oct 2018
Learning
- Advanced Excel formula
- Data analysis through Excel
- Data analysis through SPSS
- Rules and regulations of Research
Basic Training on Structure Based Drug Designing
MMDL Laboratory, BCSIR, Chattagram, Bangladesh || Aug (25-27) 2017
Learning
- Chemical Structure Draw, Virtual Screening
- Protein Modeling, Molecular Docking
- ADMET analysis, Ligand Design
- Rational Drug Designing
Gallery
